Author

Alan Guthrie

Allen Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:mouse· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:electronic health records· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Alex CahooniD· 2 shared Aixin ZhangiD· 1 shared Alana A. OyamaiD· 1 shared Allison WillifordiD· 1 shared Alvin HuangiD· 1 shared Angela P. AyalaiD· 1 shared Angela Y. FaniD· 1 shared Anna A. LakuninaiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenomics

Alex CahoonORCID

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2 papers

Recent·Most cited

Robust and accessible in situ sequencing with an open-source automated sequencer

Aixin Zhang, Zoe Maltzer, Jacob Lapka, Sabrina Cheng, Alan Guthrie, Cliff Slaughterbeck, Angela Y. Fan, Neha Goswami, Mara C.P. Rue, Maryam Majeed, Dennis M. Maharjan, Jeanelle Ariza, Angela P. Ayala, Madeleine Bixby, Cory T. Dickson, , Xiaoyin Chen

The paper introduces Seq-o-Matic, an open-source automated in situ sequencer that reduces hands-on time and improves sequencing consistency across tissue sections.

bioRxiv · Oct 23, 2026 · PreprintGenomics

SHIELD: Skull-shaped hemispheric implants enabling large-scale-electrophysiology datasets in the mouse brain

Corbett Bennett, Ben Ouellette, Tamina K. Ramirez, Alex Cahoon, Hannah Cabasco, Yoni Browning, Anna A. Lakunina, Galen F. Lynch, Ethan G. McBride, Hannah Belski, Ryan Gillis, Conor Grasso, Robert Howard, Tye Johnson, Henry Loeffler, , Shawn R. Olsen

SHIELD enables large-scale electrophysiological recordings in mice by providing a skull-shaped implant for repeated multi-probe insertions across brain regions.

Neuron · Jul 11, 2024Peer-reviewedNeuroscience