Author

Alex Bateman

European Bioinformatics Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:database / resource· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Francesco CostaiD· 2 shared Andrew GreeniD· 1 shared Anton I. PetroviD· 1 shared Anton S. PetroviD· 1 shared Antonina Andreeva· 1 shared Antonina E. AndreevaiD· 1 shared Bastian FrommiD· 1 shared Blake SweeneyiD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersBioinformatics

Francesco CostaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

RNAcentral in 2026: Genes and literature integration

Andrew Green, Carlos Eduardo Ribas, Isaac Jandalala, Philippa Muston, Colman O’Cathail, Guy Cochrane, Christina Ernst, Lingyun Zhao, Pedro Madrigal, Helen L. Attrill, Steven J Marygold, Doron Lancet, Niv Dobzinski, Patricia P. Chan, Todd M. Lowe, , Blake Sweeney

RNAcentral integrates literature and gene-level data to enhance non-coding RNA sequence analysis and functional understanding.

Nucleic Acids Research · Dec 17, 2025Peer-reviewedBioinformatics

A global survey of intramolecular isopeptide bonds

Francesco Costa, Ioannis G. Riziotis, Antonina E. Andreeva, Delhi Kalwan, Jennifer de Jong, Philip Hinchliffe, Fabio Parmeggiani, Paul R. Race, Steven G. Burston, Alex Bateman, Rob Barringer

The paper identifies and characterizes intramolecular isopeptide bonds in protein domains across organisms, revealing their structural and functional significance.

Protein Science · Nov 14, 2025Peer-reviewedBioinformatics

Temporal GWAS identifies a widely distributed novel protein Stv contributing to pathogen success in Shigella spp.

P. Malaka De Silva, Rebecca J. Bennett, Francesco Costa, Antonina Andreeva, Rebecca J. Bengtsson, Malcolm James Horsburgh, Tim R. Blower, Alex Bateman, Kate S. Baker

The paper identifies a novel protein Stv associated with Shigella's success through temporal GWAS, showing its presence in expanding lineages and other bacterial species.

bioRxiv · Aug 23, 2022 · PreprintGenomics