Author

Alexander D. Jacob

University of Toronto

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Adam I. RamsaraniD· 2 shared Andrew J. MocleiD· 2 shared Lina M. TraniD· 2 shared Paul W. FranklandiD· 2 shared Sheena A. JosselyniD· 2 shared Chen Yan· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersNeuroscience

Adam I. RamsaranORCID

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2 papers

Recent·Most cited

Automated curation of CNMF-E-extracted ROI spatial footprints and calcium traces using open-source AutoML tools

Lina M. Tran, Andrew J. Mocle, Adam I. Ramsaran, Alexander D. Jacob, Paul W. Frankland, Sheena A. Josselyn

The paper introduces an automated curation method for CNMF-E-extracted ROIs and calcium traces using TPOT and AutoSklearn, achieving an F1 score > 92% on a test dataset.

Frontiers in Neural Circuits · Jul 15, 2020Peer-reviewedNeuroscience

A compact head-mounted endoscope for in vivo calcium imaging in freely-behaving mice

Alexander D. Jacob, Adam I. Ramsaran, Andrew J. Mocle, Lina M. Tran, Chen Yan, Paul W. Frankland, Sheena A. Josselyn

This paper describes the construction and use of a low-cost, open-source head-mounted endoscope for in vivo calcium imaging in freely-behaving mice.

Current Protocols in Neuroscience · Jun 26, 2018Peer-reviewedNeuroscience