Integrated population clustering and genomic epidemiology with PopPIPE
Martin P. McHugh, Samuel Horsfield, Johanna von Wachsmann, Jacqueline Toussaint, Kerry A. Pettigrew, Elzbieta Czarniak, Thomas J. Evans, Alistair Leanord, Luke Tysall, Stephen H. Gillespie, Kate E. Templeton, Matthew T. G. Holden, Nicholas J. Croucher, John A. Lees
PopPIPE clusters bacterial populations and detects transmission events using reference-free methods, outperforming traditional approaches in nosocomial outbreak analysis.
Microbial Genomics · Apr 28, 2025Peer-reviewedBioinformatics