Stephen H. Gillespie

PopPIPE clusters bacterial populations and detects transmission events using reference-free methods, outperforming traditional approaches in nosocomial outbreak analysis.

This study shows that M. tuberculosis and M. marinum induce similar late innate immune gene responses in zebrafish larvae, supporting M. marinum as a surrogate model for tuberculosis research.

This paper develops a hybrid, multiscale, individual-based model to study SARS-CoV-2 infection spread and immune response, focusing on macrophages and their interactions with viral dynamics and cytokines.

The paper develops a networked metapopulation model of tuberculosis in the lung to show how environmental heterogeneity influences disease progression and localization.