Author

Andrew Stirn

New York Genome Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Alex David· 1 shared Alexander R. AbbasiD· 1 shared Alice M. WalshiD· 1 shared Aline RéaliD· 1 shared Anjali DasiD· 1 shared Ariel R. Brumbaugh· 1 shared Candace SavoneniD· 1 shared Claire Harbison· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Alex David

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Author profile →

2 papers

Recent·Most cited

Generative genomics accurately predicts future experimental results

Gregory Koytiger, Alice M. Walsh, Vaishali Marar, Kayla A Johnson, Max R. Highsmith, Alexander R. Abbas, Andrew Stirn, Ariel R. Brumbaugh, Alex David, Darren Hui, Jeffrey M. Kahn, Sheng-Yong Niu, Liza J. Ray, Candace Savonen, Stein Setvik, , Robert K. Bradley

This paper introduces GEM-1, a generative model that accurately predicts future gene expression experiments, achieving performance comparable to real lab experiments.

bioRxiv · Sep 8, 2025 · PreprintGenomics

Cas13d-mediated isoform-specific RNA knockdown with a unified computational and experimental toolbox

Megan D. Schertzer, Andrew Stirn, Keren Isaev, Laura Pereira, S H Park, Anjali Das, Aline Réal, Erin D. Jeffery, Claire Harbison, Hans‐Hermann Wessels, Gloria Sheynkman, Neville E. Sanjana, David A. Knowles

The paper develops a CRISPR/Cas13d-based method to specifically knockdown RNA isoforms and provides computational tools for experimental design and analysis.

Nature Communications · Jul 29, 2025Peer-reviewedGenomics