Author

Anna Neiman-Golden

University of California, Los Angeles

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Organism:human· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Paul Christopher BoutrosiD· 3 shared Philippa L. SteinbergiD· 3 shared Lydia LiuiD· 2 shared Takafumi N. YamaguchiiD· 2 shared Yash PateliD· 2 shared Aakarsh AnandiD· 1 shared Aaron HolmesiD· 1 shared Agnel J. SfeiriD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Paul Christopher BoutrosORCID

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Author profile →

3 papers

Recent·Most cited

Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline

Yash Patel, Chenghao Zhu, Takafumi N. Yamaguchi, Nicholas K. Wang, Nicholas Wiltsie, Nicole Zeltser, Alfredo E. Gonzalez, Helena K. Winata, Yu Pan, Mohammed Faizal Eeman Mootor, Timothy Sanders, Sorel T. Fitz‐Gibbon, Cyriac Kandoth, Julie M. Livingstone, Lydia Liu, , Paul Christopher Boutros

Metapipeline-DNA automates comprehensive analysis of DNA sequencing data from raw reads to visualization, supporting germline and somatic genomic features.

Cell Reports Methods · Mar 1, 2026Peer-reviewedBioinformatics

RNA Transcripts Serve as a Template for Double-Strand Break Repair in Human Cells

Manisha Jalan, Alessandra Brambati, Hina Shah, Niamh McDermott, Juber Patel, Yingjie Zhu, Ahmet Doymaz, Jing Feng Wu, Kyrie S Anderson, Andrea M. Gazzo, Fresia G. Pareja, Takafumi N. Yamaguchi, Theodore Vougiouklakis, Sana Ahmed‐Seghir, Philippa L. Steinberg, , Agnel J. Sfeir

This study demonstrates that RNA transcripts can serve as templates for double-strand break repair in human cells, identifying DNA polymerase-zeta as a key enzyme and revealing genomic scars associated with this process.

Nature Communications · May 10, 2025Peer-reviewedMolecular Biology

Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms

Philippa L. Steinberg, Lydia Liu, Anna Neiman-Golden, Yash Patel, Paul Christopher Boutros

This study evaluates how different random seeds affect subclonal reconstruction algorithms in cancer genomics, finding significant variability in subclone estimates across seeds.

bioRxiv · Feb 5, 2024 · PreprintBioinformatics