Author

Athma A Pai

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Organism:non-human primate· 1

Frequent Co-Authors

Aino I Jarvelin· 1 shared Albin SandeliniD· 1 shared Anne Dumaine· 1 shared Ariane Page Sabourin· 1 shared Christopher B Burge· 1 shared Golshid Baharian· 1 shared Jan Herudek· 1 shared Jean-Christophe Grenier· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Aino I Jarvelin

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2 papers

Recent·Most cited

Widespread shortening of 3’ untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection

Athma A Pai, Golshid Baharian, Ariane Page Sabourin, Jessica F Brinkworth, Yohann Nedelec, Joseph W Foley, Jean-Christophe Grenier, Katherine J Siddle, Anne Dumaine, Vania Yotova, Zachary P Johnson, Robert E Lanford, Christopher B Burge, Luis B Barreiro

The paper identifies widespread changes in RNA processing, including shorter 3’ UTRs and increased exon inclusion, in innate immune responses across humans and non-human primates.

PLOS Genetics · Sep 30, 2016Peer-reviewedGenomics

Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters

Yun Chen, Athma A Pai, Jan Herudek, Michal Lubas, Nicola Meola, Aino I Jarvelin, Robin Andersson, Vicent Pelechano, Lars M Steinmetz, Torben Heick Jensen, Albin Sandelin

The paper investigates how promoter spacing influences PROMPT expression, stability, and length, revealing a mechanism for generating alternative TSSs in mammalian transcriptomes.

bioRxiv · Jul 13, 2016Genomics