Author

Atimukta Jha

Institute of Life Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Arup GhoshiD· 3 shared Sunil K. RaghaviD· 3 shared Gyan Prakash MishraiD· 2 shared Abhinav K. JainiD· 1 shared Ajay Kumar ParidaiD· 1 shared Amol M. KanampalliwariD· 1 shared Amol Ratnakar SuryawanshiiD· 1 shared Ankit Kumar PathakiD· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Arup GhoshORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes

Ankit Kumar Pathak, Gyan Prakash Mishra, Bharathram Uppili, Safal Walia, Saman Fatihi, Tahseen Abbas, Sofia Banu, Arup Ghosh, Amol M. Kanampalliwar, Atimukta Jha, Sana Fatma, Shifu Aggarwal, Mahesh Shanker Dhar, Robin Marwal, Venkatraman Srinivasan Radhakrishnan, , Mitali Mukerji

The paper analyzes intra-host Single Nucleotide Variations (iSNVs) in SARS-CoV-2 genomes across multiple time points and regions, finding that many iSNVs later become population-level variants and some may contribute to immune escape.

Nucleic Acids Research · Jan 13, 2022Peer-reviewedGenomics

SARS-CoV2 genome analysis of Indian isolates and molecular modelling of D614G mutated spike protein with TMPRSS2 depicted its enhanced interaction and virus infectivity

Sunil K. Raghav, Arup Ghosh, Jyotirmayee Turuk, Sugandh Kumar, Atimukta Jha, Swati Madhulika, Manasi Priyadarshini, Viplov Kumar Biswas, P. Sushree Shyamli, Bharati Singh, Neha Singh, Deepika Singh, Ankita Datey, Kiran Avula, Shuchi Smita, , ILS COVID-19 Team

The paper analyzes SARS-CoV-2 genome sequences from Indian isolates, identifies clade distribution and transmission routes, and shows the D614G mutation enhances spike protein interaction with TMPRSS2, increasing viral infectivity.

Frontiers in Microbiology · Nov 23, 2020Peer-reviewedGenomics

Bedsect: An integrated web server application to perform intersection, visualization and functional annotation of genomic regions from multiple datasets

Gyan Prakash Mishra, Arup Ghosh, Atimukta Jha, Sunil K. Raghav

Frontiers in Genetics · Feb 5, 2020Peer-reviewedBioinformatics