Author

Audrey Kristin

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Isabella StueweiD· 2 shared Ludmil B. AlexandroviD· 2 shared Luka CulibrkiD· 2 shared Mia PetljakiD· 2 shared Shams Al-Azzam· 2 shared Shuvro Prokash NandiiD· 2 shared Yuhe ChengiD· 2 shared Bérénice ChavaneliD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Isabella StueweORCID

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2 papers

Recent·Most cited

A Universal Duplex Sequencing Approach for Accurate Detection of Somatic Mutations

Shuvro Prokash Nandi, Yuhe Cheng, Shams Al-Azzam, Safa Saeed, Audrey Kristin, Nadia Sunico, Isabella Stuewe, Zichen Jiang, Luka Culibrk, Maria Zhivagui, Xiaoxu Yang, Rachel M. Wise, Foster C. Jacobs, Bérénice Chavanel, Michael Korenjak, , Ludmil B. Alexandrov

This paper introduces UDSeq, a duplex sequencing protocol for accurate somatic mutation detection with low DNA input and high coverage, achieving a low error rate and enabling cross-species profiling.

bioRxiv · Sep 14, 2025 · PreprintGenomics

Improved Mutation Detection in Duplex Sequencing Data with Sample-Specific Error Profiles

Yuhe Cheng, Shuvro Prokash Nandi, Luka Culibrk, Audrey Kristin, Isabella Stuewe, Shams Al-Azzam, Mia Petljak, Ludmil B. Alexandrov

DupCaller improves mutation detection in duplex sequencing by using sample-specific error profiles and a strand-aware model, increasing sensitivity across various samples and conditions.

bioRxiv · Jul 13, 2025 · PreprintBioinformatics