Author
Delft University of Technology
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
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4 papers
Recent·Most cited
Berdien van Olst, Simon A. Eerden, Nella A. Eštok, Samarpita Roy, Ben A. Abbas, Yuemei Lin, Mark C.M. van Loosdrecht, Martin Pabst
The paper uses metaproteomic approaches to analyze the extracellular proteome of a granular Candidatus Accumulibacter enrichment, identifying proteins involved in biofilm formation.
bioRxiv · Nov 6, 2024 · PreprintSystems Biology
Hugo B.C. Kleikamp, Denis S. Grouzdev, Pim Schaasberg, Ramon D. van Valderen, Ramon van der Zwaan, Roel van de Wijgaart, Yuemei Lin, Ben A. Abbas, Mario Pronk, Mark C.M. van Loosdrecht, Martin Pabst
The paper compares metaproteomic and genomic approaches to study the aerobic granular sludge microbiome, highlighting differences in insights and the importance of reference databases.
Water Research · Oct 6, 2023Peer-reviewedSystems Biology
David Calderón-Franco, Dana Kok, Renzo Dukker, Ben A. Abbas, Joana Abreu-Silva, Jaqueline Abel da Rocha, Marco Antonio Lopez Marin, Rebeca Pallarés-Vega, Stanislav Gajdoš, Mythili Ananth, Seeram Apoorva, Ivan Karpíšek, Milada Šolcová, Lucía Hernández Leal, Jan Bartáček, , David Gregory Weissbrodt
This study evaluates how DNA extraction methods affect microbiome and resistome analysis in activated sludge, finding significant variability in results depending on the technique used.
bioRxiv · Jun 26, 2023 · PreprintMolecular Biology
Hugo B.C. Kleikamp, Mario Pronk, Claudia G. Tugui, Leonor Guedes da Silva, Ben A. Abbas, Yue Mei Lin, Mark C.M. van Loosdrecht, Martin Pabst
This paper introduces a de novo metaproteomics pipeline and validation strategy to enable quantitative profiling of microbial communities without relying on sequence databases.
Cell Systems · Apr 30, 2021Peer-reviewedSystems Biology