Author

Berdien van Olst

Delft University of TechnologyORCID 0000-0001-8596-0171Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 3

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Mark C.M. van LoosdrechtiD· 2 shared Martin PabstiD· 2 shared Bas TeusinkiD· 1 shared Ben A. Abbas· 1 shared Douwe Molenaar BiD· 1 shared Eunice van Pelt‐KleinJaniD· 1 shared Herwig BachmanniD· 1 shared Jens NielseniD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersSystems Biology

Mark C.M. van LoosdrechtORCID

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3 papers

Recent·Most cited

Meta-PepView: a metaproteomics performance evaluation and visualization platform

Ramon van der Zwaan, Berdien van Olst, Mark C.M. van Loosdrecht, Martin Pabst

Meta-PepView evaluates and visualizes metaproteomics data through a web-based platform, offering modular design and open-source access.

bioRxiv · Dec 7, 2025 · PreprintSystems Biology

Metaproteomic profiling of the secretome of a granule-forming Ca. Accumulibacter enrichment

Berdien van Olst, Simon A. Eerden, Nella A. Eštok, Samarpita Roy, Ben A. Abbas, Yuemei Lin, Mark C.M. van Loosdrecht, Martin Pabst

The paper uses metaproteomic approaches to analyze the extracellular proteome of a granular Candidatus Accumulibacter enrichment, identifying proteins involved in biofilm formation.

bioRxiv · Nov 6, 2024 · PreprintSystems Biology

Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments

Yu Chen, Eunice van Pelt‐KleinJan, Berdien van Olst, Sieze Douwenga, Sjef A. Boeren, Herwig Bachmann, Douwe Molenaar B, Jens Nielsen, Bas Teusink

The paper identifies nutrient uptake constraints in Lactococcus lactis using a proteome-constrained model and experimental data, showing how these constraints influence metabolic fluxes and fitness in nutrient-rich environments.

Molecular Systems Biology · Apr 1, 2021Peer-reviewedSystems Biology