Author

C. Dunn

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Cell Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

S. H. Church· 2 shared A. Rokas· 1 shared B. Park· 1 shared C. Coletta· 1 shared C. G. Extavour· 1 shared C. Munro· 1 shared C. Nguyen· 1 shared C. Shi· 1 shared

Activity by Year

2020-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 6 mutual co-author links

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2 shared papersCell Biology

S. H. Church

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Normalizing need not be the norm: count-based math for analyzing single-cell data

S. H. Church, J. L. Mah, G. Wagner, C. Dunn

This paper proposes an alternative to normalization in scRNA-seq by using a restricted algebra to preserve count data, enabling meaningful comparisons without distorting results.

bioRxiv · Jun 1, 2022Cell Biology

Single-cell analysis of skeletal muscle macrophages reveals age- associated functional subpopulations

L. K. Krasniewski, P. Chakraborty, C.-Y. Cui, K. Mazan-Mamczarz, C. Dunn, Y. Piao, J. Fan, C. Shi, T. Wallace, C. Nguyen, I. A. Rathbun, R. Munk, D. Tsitsipatis, S. De, P. Sen, , M. M Gorospe

This study identifies age-associated functional subpopulations of skeletal muscle macrophages using single-cell transcriptomics in mice.

bioRxiv · Feb 23, 2022Cell Biology

Rat leukocyte population dynamics predicts a window for intervention in aging.

I. Beerman, H. Yanai, C. Dunn, B. Park, C. Coletta, R. McDevitt, T. McNeely, M. Leone, R. P. Wersto, K. Perdue

The paper examines age-related changes in rat hematopoiesis and identifies blood metrics that predict aging and intervention opportunities.

bioRxiv · Jan 12, 2022Evolutionary Biology

The evolution of ovary-biased gene expression in Hawaiian Drosophila

S. H. Church, C. Munro, C. Dunn, C. G. Extavour

The paper analyzes RNAseq data from twelve Hawaiian Drosophilidae species to study ovary-biased gene expression evolution, finding stable gene cohorts and significant correlations between interacting genes.

bioRxiv · Nov 30, 2021Evolutionary Biology

A functional bacterial-derived restriction modification system in the mitochondrion of a heterotrophic protist

D. Milner, J. Wideman, C. Stairs, C. Dunn, T. A. Richards

The paper identifies a functional bacterial-derived restriction modification system in a protist's mitochondrial genome, suggesting its role in uniparental organellar inheritance.

bioRxiv · Feb 1, 2021Evolutionary Biology

A genome-scale phylogeny of Fungi; insights into early evolution, radiations, and the relationship between taxonomy and phylogeny

Y. Li, J. L. Steenwyk, Y. Chang, Y. Wang, T. Y. James, J. E. Stajich, J. W. Spatafora, M. Groenewald, C. Dunn, C. T. Hittinger, X.-X. Shen, A. Rokas

The paper constructs a genome-scale fungal phylogeny using 1,644 species and multiple data matrices, finding robust relationships and identifying taxonomic discrepancies.

bioRxiv · Aug 23, 2020Evolutionary Biology