Author

C. Monagin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:host-pathogen & immune response· 3 Organism:bacteria (other)· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Organism:mouse· 1 Organism:multiple species· 1 Research Focus:variant calling· 1

Frequent Co-Authors

A. Gillis· 3 shared D. J. McIver· 3 shared D. O. Joly· 3 shared E. M. Rubin· 3 shared J. A. Ayukekbong· 3 shared K. Saylors· 3 shared M. LeBreton· 3 shared N. D. Wolfe· 3 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

A. Gillis

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Targeted genomic sequencing with probe capture for discovery and surveillance of coronaviruses in bats

K. S. Kuchinski, K. D. Loos, D. M. Suchan, J. N. Russell, A. N. Sies, C. Kumakamba, F. Muyembe, P. Mbala Kingebeni, I. Ngay Lukusa, F. NKawa, J. Atibu Losoma, M. Makuwa, A. Gillis, M. LeBreton, J. A. Ayukekbong, , A. D. S. Cameron

This study uses hybridization probe capture to improve genome recovery from bat coronavirus specimens, identifying novel viruses and achieving higher sequence coverage than standard methods.

bioRxiv · Apr 25, 2022Microbiology

Wildlife in Cameroon harbor diverse coronaviruses including many isolates closely related to human coronavirus 229E

N. F. Ntumvi, V. Ngum Ndze, A. Gillis, J. Le Doux Diffo, U. Tamoufe, J.-M. Takuo, M. M. M. Mouiche, J. Nwobegahay, M. LeBreton, A. W. Rimoin, B. S. Schneider, C. Monagin, D. J. McIver, S. Roy, J. A. Ayukekbong, , C. E. Lange

The paper identifies diverse coronaviruses in Cameroon wildlife, including HCoV-229E-like viruses in bats, and highlights ecological factors influencing their circulation.

bioRxiv · Sep 3, 2021Microbiology

Coronavirus surveillance in Congo basin wildlife detects RNA of multiple species circulating in bats and rodents

C. Kumakamba, F. R. Niama, F. Muyembe, J.-V. Mombouli, P. M. Kingebeni, R. A. Nina, I. N. Lukusa, G. Bounga, F. NKawa, C. G. Nkoua, J. Atibu Losoma, P. Mulembakani, M. Makuwa, U. Tamufe, A. Gillis, , C. Lange

The paper surveys coronaviruses in Congo Basin wildlife, finding RNA in 121 animals, mostly bats, with some sequences closely related to human coronaviruses.

bioRxiv · Jul 20, 2020Microbiology

Bridging the gap: Using reservoir ecology and human serosurveys to estimate Lassa virus spillover in West Africa

A. J. Basinski, E. J. Fichet-Calvet, A. R. Sjodin, T. J. Varrelman, C. Remien, N. C. Layman, B. H. Bird, D. J. Wolking, C. Monagin, B. M. Ghersi, P. A. Barry, M. A. Jarvis, P. E. Gessler, S. L. Nuismer

This paper develops a machine learning framework to estimate Lassa virus spillover risk by separating reservoir and spillover risk components, finding Nigeria accounts for over half of annual infections.

bioRxiv · Mar 5, 2020Ecology