Author

A. Gillis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:host-pathogen & immune response· 4 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:differential expression· 1 Assay:metagenomics· 1

Frequent Co-Authors

D. J. McIver· 4 shared D. O. Joly· 4 shared E. M. Rubin· 4 shared K. Saylors· 4 shared M. LeBreton· 4 shared C. E. Lange· 3 shared C. Monagin· 3 shared J. A. Ayukekbong· 3 shared

Activity by Year

2018-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

4 shared papersMicrobiology

D. J. McIver

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Targeted genomic sequencing with probe capture for discovery and surveillance of coronaviruses in bats

K. S. Kuchinski, K. D. Loos, D. M. Suchan, J. N. Russell, A. N. Sies, C. Kumakamba, F. Muyembe, P. Mbala Kingebeni, I. Ngay Lukusa, F. NKawa, J. Atibu Losoma, M. Makuwa, A. Gillis, M. LeBreton, J. A. Ayukekbong, , A. D. S. Cameron

This study uses hybridization probe capture to improve genome recovery from bat coronavirus specimens, identifying novel viruses and achieving higher sequence coverage than standard methods.

bioRxiv · Apr 25, 2022Microbiology

Wildlife in Cameroon harbor diverse coronaviruses including many isolates closely related to human coronavirus 229E

N. F. Ntumvi, V. Ngum Ndze, A. Gillis, J. Le Doux Diffo, U. Tamoufe, J.-M. Takuo, M. M. M. Mouiche, J. Nwobegahay, M. LeBreton, A. W. Rimoin, B. S. Schneider, C. Monagin, D. J. McIver, S. Roy, J. A. Ayukekbong, , C. E. Lange

The paper identifies diverse coronaviruses in Cameroon wildlife, including HCoV-229E-like viruses in bats, and highlights ecological factors influencing their circulation.

bioRxiv · Sep 3, 2021Microbiology

Defining the early stages of intestinal colonisation by whipworms

M. A. Duque Correa, D. Goulding, F. Rodgers, C. Cormie, K. A. Rawlinson, A. Gillis, A. J. Bancroft, H. M. Bennett, M. Lotkowska, A. J. Reid, A. O. Speak, P. Scott, N. Redshaw, C. McCarthy, C. Brandt, , M. Berriman

This study investigates whipworm invasion of the intestinal epithelium using mouse models and single-cell RNA sequencing, revealing host-parasite interactions and immune responses.

bioRxiv · Aug 21, 2020Immunology

Coronavirus surveillance in Congo basin wildlife detects RNA of multiple species circulating in bats and rodents

C. Kumakamba, F. R. Niama, F. Muyembe, J.-V. Mombouli, P. M. Kingebeni, R. A. Nina, I. N. Lukusa, G. Bounga, F. NKawa, C. G. Nkoua, J. Atibu Losoma, P. Mulembakani, M. Makuwa, U. Tamufe, A. Gillis, , C. Lange

The paper surveys coronaviruses in Congo Basin wildlife, finding RNA in 121 animals, mostly bats, with some sequences closely related to human coronaviruses.

bioRxiv · Jul 20, 2020Microbiology

Coronavirus surveillance of wildlife in the Lao People's Democratic Republic detects viral RNA in rodents

D. J. McIver, S. Silithammavong, W. Theppangna, A. Gillis, B. Douangngeun, K. Khammavong, S. Singhalath, V. Duong, P. Buchy, S. H. Olson, L. Keatts, A. E. Fine, Z. Greatorex, M. Gilbert, M. LeBreton, , C. E. Lange

The paper detects Betacoronavirus RNA in 12 rodents from Laos, belonging to two genetic clusters related to regional rodent coronaviruses and distantly to human coronaviruses.

bioRxiv · Apr 22, 2020Microbiology

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Bacteriophages

J. Barylski, F. Enault, B. E. Dutilh, M. B. Schuller, R. A. Edwards, A. Gillis, J. Klumpp, P. Knezevic, M. Krupovic, J. H. Kuhn, R. Lavigne, H. M. Oksanen, M. B. Sullivan, J. Wittmann, I. Tolstoy, , E. M. Adriaenssens

The paper evaluates taxonomy methods for bacteriophages using Spounavirinae as a case study, finding they should be divided into at least five subfamilies.

bioRxiv · Feb 7, 2018Microbiology