Author

C. S. Smith

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3 Cell Biology· 1 Ecology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 5 Approach:deep learning· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:dimensionality reduction· 1 Organism:Drosophila· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

J. Cnossen· 2 shared A. Dao· 1 shared A. Houtsmuller· 1 shared A. Noma· 1 shared A. S. Yaro· 1 shared B. Bodiya· 1 shared B. J. Krajacich· 1 shared C. Bartlett· 1 shared

Activity by Year

2017-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 8 mutual co-author links

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2 shared papersBiophysics

J. Cnossen

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Author profile →

6 papers

Recent·Most cited

Using splines for point spread function calibration atnon-uniform depths in localization microscopy

S. Korovin, D. Kalisvaart, S.-T. Hung, J. Cnossen, C. de Visser, C. S. Smith

This paper introduces a spline-based method for depth-dependent PSF calibration in localization microscopy, improving PSF accuracy and localization precision.

bioRxiv · Jan 24, 2024 · PreprintBiophysics

Drift correction in localization microscopy using entropy minimization

J. Cnossen, T. J. Cui, C. Joo, C. S. Smith

This paper introduces an entropy minimization method to improve drift correction in localization microscopy, achieving 5x better precision than existing methods without fiducial markers.

bioRxiv · Mar 30, 2021Biophysics

Structured illumination microscopy with noise-controlled image reconstructions

C. S. Smith, J. Slotman, L. Schermelleh, N. Chakrova, S. Hari, Y. Vos, C. W. Hagen, M. Mueller, W. van Cappellen, A. Houtsmuller, J. P. Hoogenboom, S. Stallinga

This paper introduces noise-controlled reconstruction methods for structured illumination microscopy to reduce artefacts and improve image quality.

bioRxiv · Mar 11, 2021Biophysics

Matchathon: A guide to student-faculty connections in PhD programs

H. M. Amemiya, Z. Lapp, C. S. Smith, M. M. Durdan, M. DiMondo, B. Bodiya, S. Barolo

The paper introduces a Matchathon event and an R Shiny app to help PhD students find mentors based on research interests, improving academic environment and retention.

bioRxiv · Nov 6, 2020 · PreprintScientific Communication & Education

Massive windborne migration of Sahelian insects: Diversity, seasonality, altitude, and direction

J. Florio, L. Veru, A. Dao, A. S. Yaro, M. Diallo, Z. L. Sanogo, D. Samake, D. L. Huestis, O. Yossi, E. Talamas, L. Chomorro, H. J. Frank, M. Biondi, C. Morkel, C. Bartlett, , T. Lehmann

The paper investigates windborne insect migration in the Sahel, finding large-scale movements across seasons, altitudes, and directions, with implications for ecosystem dynamics.

bioRxiv · Feb 28, 2020 · PreprintEcology

Single-molecule FISH in Drosophila muscle reveals location dependent mRNA composition of megaRNPs

A. Noma, C. S. Smith, M. Huisman, R. M. Martin, M. J. Moore, D. Grunwald

The paper develops a method to accurately localize mRNA in thick Drosophila muscle tissues using optimized smFISH and 3D segmentation.

bioRxiv · Jun 26, 2017Cell Biology