Author

C. Siepker

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Organism:chicken / avian· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. Saxena· 1 shared D. E. Stallknecht· 1 shared D. R. Magstadt· 1 shared E. Burrough· 1 shared E. W. Howerth· 1 shared G. Li· 1 shared H. S. Sellers· 1 shared I. Padykula· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMicrobiology

A. Saxena

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Highly Pathogenic Avian Influenza A (H5N1) clade 2.3.4.4b Virus detected in dairy cattle

X. Hu, A. Saxena, D. R. Magstadt, P. C. Gauger, E. Burrough, J. Zhang, C. Siepker, M. Mainenti, P. Gorden, P. Plummer, G. Li

The paper identifies a new genotype of HPAI H5N1 virus in dairy cattle, showing genetic changes but lacking key mutations for mammalian adaptation.

bioRxiv · Apr 16, 2024 · PreprintMicrobiology

Randomly primed, strand-switching MinION-based sequencing for the detection and characterization of cultured RNA viruses

K. T. Young, K. K. Lahmers, H. S. Sellers, D. E. Stallknecht, R. L. Poulson, J. T. Saliki, S. M. Tompkins, I. Padykula, C. Siepker, E. W. Howerth, M. Todd, J. B. Stanton

This study evaluates a MinION-based sequencing method for detecting and characterizing RNA viruses using random priming and strand-switching, showing its effectiveness for known and unknown viruses.

bioRxiv · Dec 16, 2019Pathology