Author

C. W. dePamphilis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Organism:plant (other)· 4 Approach:experimental assay· 3 Research Focus:host-pathogen & immune response· 3 Assay:whole-genome sequencing· 3 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Approach:statistical model· 2

Frequent Co-Authors

E. A. Kelly· 2 shared E. S. Bellis· 2 shared N. R. Johnson· 2 shared S. M. Runo· 2 shared A. Andres-Robin· 1 shared A. Bewick· 1 shared A. Budden· 1 shared A. Harkess· 1 shared

Activity by Year

2017-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersEvolutionary Biology

E. A. Kelly

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Author profile →

5 papers

Recent·Most cited

Genomic signatures of host-specific selection in a parasitic plant

E. S. Bellis, C. S. von Munchow, A. Kronberger, C. O. Odero, E. A. Kelly, T. Xia, X. Huang, S. Wicke, S. M. Runo, C. W. dePamphilis, J. R. Lasky

This study identifies genomic regions associated with host specificity in Striga hermonthica using whole genome sequencing and finds host-specific selection on haustorium development genes rather than strigolactone response.

bioRxiv · Feb 1, 2022 · PreprintEvolutionary Biology

A derived ZW chromosome system in Amborella trichopoda, the sister species to all other extant flowering plants

J. Kafer, A. Bewick, A. Andres-Robin, G. Lapetoule, A. Harkess, J. Caius, B. Fogliani, G. Gateble, P. Ralph, C. W. dePamphilis, F. Picard, C. P. Scutt, J. Leebens-Mack, G. A. Marais

The paper identifies a ZW sex chromosome system in Amborella trichopoda, revealing a 4 Mb sex-determining region on chromosome 9 with recent divergence.

bioRxiv · Dec 21, 2020Plant Biology

Genomics of sorghum local adaptation to a parasitic plant

E. S. Bellis, E. A. Kelly, C. M. Lorts, H. Gao, V. L. Deleo, G. Rouhan, A. Budden, G. B. Bhaskara, Z. Hu, R. Muscarella, M. P. Timko, B. Nebie, S. M. Runo, N. D. Chilcoat, T. E. Juenger, , J. Lasky

This study identifies genetic variants in sorghum associated with resistance to the parasitic weed Striga hermonthica, revealing balancing selection and tradeoffs in resistance mechanisms.

bioRxiv · Dec 5, 2019Evolutionary Biology

Compensatory sequence variation between trans-species small RNAs and their target sites

N. R. Johnson, C. W. dePamphilis, M. J. Axtell

The parasitic plant Cuscuta produces a diverse set of sRNAs that compensate for sequence variation in mRNA targets in diverse hosts.

bioRxiv · Jun 19, 2019Plant Biology

MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs

S. Shahid, G. Kim, N. R. Johnson, E. Wafula, F. Wang, C. Coruh, V. Bernal-Galeano, T. Phifer, C. W. dePamphilis, J. H. Westwood, M. Axtell

This study identifies microRNAs from the parasitic plant Cuscuta campestris that target host mRNAs, leading to mRNA cleavage and reduced accumulation, and suggests they may function as virulence factors.

bioRxiv · Sep 29, 2017Plant Biology