Author

Carolyn I. Allen

Brigham Young University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Andikan J. NwosuiD· 1 shared Brian C. SearleiD· 1 shared Daniel D. Machado· 1 shared Hannah Boekweg· 1 shared Lindsay K. PinoiD· 1 shared Michaela A. McCown· 1 shared Rico MeinliD· 1 shared Ryan KellyiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Andikan J. NwosuORCID

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2 papers

Recent·Most cited

BioinformaticsJournal of Proteome ResearchPeer-reviewedJul 7, 2023

nf-encyclopedia: A cloud-ready pipeline for chromatogram library data-independent acquisition proteomics workflows

Carolyn I. Allen, Rico Meinl, Sebastian Juan Paez…·William E. Fondrie

The paper introduces nf-encyclopedia, a NextFlow pipeline for DIA proteomics analysis, showing it works well on cloud and local platforms and improves protein quantification with MSstats.

6 citations

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 29, 2021

Temporal variation in lymphocyte proteomics

Michaela A. McCown, Carolyn I. Allen, Daniel D. Machado…·Samuel Payne

This study investigates proteomic changes in CLL during the asymptomatic stage using small sample sizes and highlights the need for larger control populations sampled over time.

DOI 10.1101/2021.07.29.454362

humanproteomics

𝕏 PostBluesky