Sebastian Juan Paez

The paper shows that single-cell heterogeneity in IFN induction potential is heritable and driven by baseline variation in JNK and AP-1 signaling states.

Carafe2 generates high-quality in silico spectral libraries for timsTOF DIA proteomics by fine-tuning deep learning models on DIA data, outperforming DDA-trained models in multiple applications.

The paper links an age-associated CD8+ T cell subset to symptomatic benign prostatic hyperplasia through immune aging mechanisms.

This paper introduces a method to profile the regulome across human cell lines and perturbations, revealing transcription factor dynamics and drug responses.

The paper introduces nf-encyclopedia, a NextFlow pipeline for DIA proteomics analysis, showing it works well on cloud and local platforms and improves protein quantification with MSstats.