Author

Cathrin Herder

Karlsruhe Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:zebrafish· 3 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1

Frequent Co-Authors

Ewan BirneyiD· 3 shared Felix LoosliiD· 3 shared Ian BrettelliD· 3 shared Joachim WittbrodtiD· 3 shared Narendar Aadepu· 3 shared Tomas W. FitzgeraldiD· 3 shared Adrien LégeriD· 2 shared Bettina WelziD· 2 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Ewan BirneyORCID

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3 papers

Recent·Most cited

Measurement and classification of bold-shy behaviours in medaka fish

Saul Pierotti, Ian Brettell, Tomas W. Fitzgerald, Cathrin Herder, Narendar Aadepu, Christian Pylatiuk, Joachim Wittbrodt, Ewan Birney, Felix Loosli

The paper develops a behavioral assay and uses a Hidden Markov Model to analyze bold-shy behaviors in medaka fish, identifying direct and social genetic effects on behavior.

Bioinformatics · Jun 1, 2025Peer-reviewedBioinformatics

The Medaka Inbred Kiyosu-Karlsruhe (MIKK) Panel

Tomas W. Fitzgerald, Ian Brettell, Adrien Léger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl Barton, Cathrin Herder, Narendar Aadepu, Jakob Gierten, Clara Becker, Omar T. Hammouda, Eva Hasel, Colin Q. Lischik, Katharina Lust, , Felix Loosli

The paper introduces the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel, a vertebrate genetic resource for genotype-to-phenotype studies, enabling controlled experiments on complex traits.

Genome biology · Feb 21, 2022Peer-reviewedGenomics

Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel

Adrien Léger, Ian Brettell, Jack Monahan, Carl Barton, Nadeshda Wolf, Natalja Kusminski, Cathrin Herder, Narendar Aadepu, Clara Becker, Jakob Gierten, Omar T. Hammouda, Eva Hasel, Colin Q. Lischik, Katharina Lust, Natalia Sokolova, , Tomas W. Fitzgerald

The paper analyzes genomic and epigenomic variation in the MIKK panel using long-read sequencing and pan-genome graphs, revealing novel structural variants and methylation patterns.

Genome biology · Feb 21, 2022Peer-reviewedGenomics