Author
European Bioinformatics InstituteORCID 0000-0002-0635-0015Unclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Marcio Soares Ferreira, Sebastian Stricker, Tomas W. Fitzgerald, Jack Monahan, Fanny Defranoux, Philip Watson, Bettina Welz, Omar T. Hammouda, Joachim Wittbrodt, Ewan Birney
FEHAT automatically detects heart rates in Medaka fish embryos from high-resolution videos, showing reliable performance across temperature perturbations.
Bioinformatics · Nov 6, 2024Peer-reviewedBioinformatics
Jens Füllgrabe, Walraj S. Gosal, Páidí Creed, Sidong Liu, Casper K. Lumby, David J. Morley, Tobias W. B. Ost, Albert J. Vilella, Shirong Yu, Helen Bignell, Philippa Burns, Tom Charlesworth, Beiyuan Fu, Howerd Fordham, Nicholas J. Harding, , Shankar Balasubramanian
This paper introduces a method to simultaneously sequence genetic and epigenetic bases in DNA with single-base resolution, demonstrating accuracy and versatility in human genomic and cell-free DNA samples.
Nature Biotechnology · Feb 6, 2023Peer-reviewedGenomics
Tomas W. Fitzgerald, Ian Brettell, Adrien Léger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl Barton, Cathrin Herder, Narendar Aadepu, Jakob Gierten, Clara Becker, Omar T. Hammouda, Eva Hasel, Colin Q. Lischik, Katharina Lust, , Felix Loosli
The paper introduces the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel, a vertebrate genetic resource for genotype-to-phenotype studies, enabling controlled experiments on complex traits.
Genome biology · Feb 21, 2022Peer-reviewedGenomics
Adrien Léger, Ian Brettell, Jack Monahan, Carl Barton, Nadeshda Wolf, Natalja Kusminski, Cathrin Herder, Narendar Aadepu, Clara Becker, Jakob Gierten, Omar T. Hammouda, Eva Hasel, Colin Q. Lischik, Katharina Lust, Natalia Sokolova, , Tomas W. Fitzgerald
The paper analyzes genomic and epigenomic variation in the MIKK panel using long-read sequencing and pan-genome graphs, revealing novel structural variants and methylation patterns.
Genome biology · Feb 21, 2022Peer-reviewedGenomics