Author

Chao-Chung Kuo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Ivan G. CostaiD· 2 shared Wolfgang WagneriD· 2 shared Annamarija Raic· 1 shared Edgar JostiD· 1 shared Fabio TicconiiD· 1 shared Joana Frobel· 1 shared Marie Kalwa· 1 shared Martin ZenkeiD· 1 shared

Activity by Year

2016-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersCell Biology

Ivan G. CostaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Variants of DNMT3A cause transcript-specific DNA methylation patterns and affect hematopoietic differentiation

Tanja Božić, Joana Frobel, Annamarija Raic, Fabio Ticconi, Chao-Chung Kuo, Stefanie Heilmann-Heimbach, Tamme W. Goecke, Martin Zenke, Edgar Jost, Ivan G. Costa, Wolfgang Wagner

This study shows that specific DNMT3A transcripts have distinct epigenetic and functional effects on hematopoietic differentiation and are linked to AML outcomes.

bioRxiv · May 9, 2018 · PreprintCell Biology

Triplex Domain Finder: Detection of Triple Helix Binding Domains in Long Non-Coding RNAs

Sonja Hänzelmann, Chao-Chung Kuo, Marie Kalwa, Wolfgang Wagner, Ivan G. Costa

The paper introduces Triplex Domain Finder (TDF), a tool to detect DNA binding domains in lncRNAs by analyzing RNA-DNA interactions, and demonstrates its effectiveness on known triple helix-forming lncRNAs.

bioRxiv · Jan 8, 2016 · PreprintBioinformatics