Author

Cydney L. Rios

National Jewish Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Organism:human· 3 Approach:statistical model· 3 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Max A. SeiboldiD· 3 shared Celeste S. EngiD· 2 shared Esteban G. BurchardiD· 2 shared Jamie L. EvermaniD· 2 shared Michael T. MontgomeryiD· 2 shared Nathan D. JacksoniD· 2 shared Agata Wesolowska‐AnderseniD· 1 shared Andrew D. SmithiD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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3 shared papersGenomics

Max A. SeiboldORCID

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3 papers

Recent·Most cited

Atopic dermatitis complicated by recurrent eczema herpeticum is characterized by multiple, concurrent epidermal inflammatory endotypes

Nathan D. Jackson, Nathan T. Dyjack, Elena Goleva, Lianghua Bin, Michael T. Montgomery, Cydney L. Rios, Jamie L. Everman, Patricia A. Taylor, Caroline Bronchick, Brittany N. Richers, Donald Y.M. Leung, Max A. Seibold

This study identifies distinct epidermal inflammatory endotypes in atopic dermatitis patients with recurrent eczema herpeticum, showing concurrent type 2 cytokine, interferon, and IL-36γ-driven inflammation and dysregulated epidermal differentiation complex genes.

JID Innovations · Apr 1, 2024Peer-reviewedMolecular Biology

Type 2 and interferon inflammation strongly regulate SARS-CoV-2 related gene expression in the airway epithelium

Satria P. Sajuthi, Peter DeFord, Yingchun Li, Nathan D. Jackson, Michael T. Montgomery, Jamie L. Everman, Cydney L. Rios, Elmar Pruesse, James D. Nolin, Elizabeth G. Plender, Michael E. Wechsler, Angel C. Y. Mak, Celeste S. Eng, Sandra Salazar, Vivian Medina, , Max A. Seibold

The paper identifies eQTLs for ACE2 and TMPRSS2 in children's airway transcriptomes and links their expression to T2 inflammation and interferon responses, influencing SARS-CoV-2 infectivity.

Nature Communications · Oct 12, 2020Peer-reviewedGenomics

Comprehensive analysis of RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues

Serghei Mangul, Harry Taegyun Yang, Nicolas B. Strauli, Franziska Gruhl, Hagit T. Porath, Kevin Hsieh, Linus Chen, Timothy Daley, Stephanie A. Christenson, Agata Wesolowska‐Andersen, Roberto Spreafico, Cydney L. Rios, Celeste S. Eng, Andrew D. Smith, Ryan D. Hernandez, , Noah Zaitlen

This paper introduces ROP to identify the source of unmapped RNA-Seq reads across diverse tissues, showing it can account for 99.9% of 1 trillion reads and reveals immune and microbial correlations.

Genome biology · Feb 15, 2018Peer-reviewedGenomics