Author

Cyrus A. Mallon

University Medical Center Groningen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:metagenomics· 3 Research Focus:cell type annotation· 2 Approach:comparative / phylogenetic analysis· 1 Approach:deep learning· 1 Research Focus:ecology & biodiversity· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

Alexandra ZhernakovaiD· 3 shared Asier Fernández-PatoiD· 3 shared James A D DochertyiD· 3 shared Nataliia KuzubiD· 3 shared Trishla SinhaiD· 3 shared Alexander KurilshikoviD· 2 shared Dena EnnisiD· 2 shared Jingyuan FuiD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

Alexandra ZhernakovaORCID

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Author profile →

3 papers

Recent·Most cited

Comprehensive profiling of infant gut virome assembly reveals associations with eczema and wheeze

Sanzhima Garmaeva, Nataliia Kuzub, Asier Fernández-Pato, Sofia Sheveleva, Jody Gelderloos-Arends, Marloes Kruk, Anastasia A. Gulyaeva, Trishla Sinha, Johanne E. Spreckels, Siobhan Brushett, Cyrus A. Mallon, James A D Docherty, LifeLines NEXT cohort study, Edze Rients Westra, Jingyuan Fu, , Alexandra Zhernakova

This study profiles the infant gut virome using dual methods and finds associations with eczema and wheeze.

bioRxiv · Jun 24, 2026 · PreprintMicrobiology

Prophages of infant-derived Bifidobacterium longum subspecies employ antagonistic and synergistic strategies to persist in their host

James A D Docherty, Nataliia Kuzub, Asier Fernández-Pato, Trishla Sinha, Sergio George, Sergio Andreu‐Sánchez, Yuvashankar Kavanal Jayaprakash, Milla F. Brandao Gois, Dena Ennis, LifeLines NEXT cohort study, Cyrus A. Mallon, Sanzhima Garmaeva, Moran Yassour, Alexandra Zhernakova

The paper identifies and analyzes prophages in infant-derived Bifidobacterium longum subspecies, revealing their antagonistic and synergistic strategies for persistence in the gut.

bioRxiv · Feb 18, 2026 · PreprintMicrobiology

Discovery, functionality and global dynamics of Bifidobacterium longum subsp. nexti : a novel starch-degrading subspecies in the infant gut

Dena Ennis, Sergio Andreu‐Sánchez, Yuvashankar Kavanal Jayaprakash, Trishla Sinha, Haoran Peng, Omer Goldberger, James A D Docherty, Nataliia Kuzub, Asier Fernández-Pato, Shijie Zhao, Yan Shao, Yarden Levin, LLNEXT cohort study, Orna Amster‐Choder, Trevor D. Lawley, , Moran Yassour

The paper identifies a novel subspecies of Bifidobacterium longum, BL. nexti, in infant gut microbiomes, showing its association with formula feeding and vertical transmission.

bioRxiv · Jun 23, 2025 · PreprintMicrobiology