Author

LifeLines NEXT cohort study

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

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Research Focus:cell type annotation· 3 Organism:human· 3 Assay:metagenomics· 3 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alexandra ZhernakovaiD· 3 shared Asier Fernández-PatoiD· 3 shared Nataliia KuzubiD· 3 shared Sanzhima GarmaevaiD· 3 shared Trishla SinhaiD· 3 shared Alexander KurilshikoviD· 2 shared Anastasia A. GulyaevaiD· 2 shared Cyrus A. Mallon· 2 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

Alexandra ZhernakovaORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Comprehensive profiling of infant gut virome assembly reveals associations with eczema and wheeze

Sanzhima Garmaeva, Nataliia Kuzub, Asier Fernández-Pato, Sofia Sheveleva, Jody Gelderloos-Arends, Marloes Kruk, Anastasia A. Gulyaeva, Trishla Sinha, Johanne E. Spreckels, Siobhan Brushett, Cyrus A. Mallon, James A D Docherty, LifeLines NEXT cohort study, Edze Rients Westra, Jingyuan Fu, , Alexandra Zhernakova

This study profiles the infant gut virome using dual methods and finds associations with eczema and wheeze.

bioRxiv · Jun 24, 2026 · PreprintMicrobiology

Pregnancy and Early-Life Gut Virome in the Lifelines NEXT cohort:Origin, Persistence, Influencing Factors and Health Implications

Asier Fernández-Pato, Anastasia A. Gulyaeva, Nataliia Kuzub, Trishla Sinha, Siobhan Brushett, Johanne E. Spreckels, Milla F. Brandao Gois, Archontis Goumagias, Angel Jonathan Ruiz-Moreno, Antoni Pedro Camargo, LifeLines NEXT cohort study, Jingyuan Fu, Alexander Kurilshikov, Simon Roux, Sanzhima Garmaeva, Alexandra Zhernakova

The paper analyzes the gut virome in mother-infant pairs to identify factors influencing its development and persistence, finding that delivery mode and breastmilk shape the infant virome and that viral diversity is linked to food allergies.

bioRxiv · Mar 12, 2026 · PreprintMicrobiology

Prophages of infant-derived Bifidobacterium longum subspecies employ antagonistic and synergistic strategies to persist in their host

James A D Docherty, Nataliia Kuzub, Asier Fernández-Pato, Trishla Sinha, Sergio George, Sergio Andreu‐Sánchez, Yuvashankar Kavanal Jayaprakash, Milla F. Brandao Gois, Dena Ennis, LifeLines NEXT cohort study, Cyrus A. Mallon, Sanzhima Garmaeva, Moran Yassour, Alexandra Zhernakova

The paper identifies and analyzes prophages in infant-derived Bifidobacterium longum subspecies, revealing their antagonistic and synergistic strategies for persistence in the gut.

bioRxiv · Feb 18, 2026 · PreprintMicrobiology