Author

D. Cirillo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:variant effect prediction· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Spitaleri· 2 shared A. Armaos· 1 shared A. Barbova· 1 shared A. Cabibbe· 1 shared A. Crisanti· 1 shared A. Dean· 1 shared A. Skrahina· 1 shared A. Valencia· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersEvolutionary Biology

A. Spitaleri

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer

A. Armaos, F. Serra, I. Nunez Carpintero, J. H. Seo, S. C. Baca, S. Gustincich, A. Valencia, M. L. Freedman, D. Cirillo, C. Giambartolomei, G. G. Tartaglia

PENGUIN reconstructs protein interactions at enhancer-promoter regions and identifies cancer-associated SNPs in prostate cancer cell lines.

bioRxiv · Oct 20, 2022Cancer Biology

Rapid longitudinal SARS-CoV-2 intra-host emergence of novel haplotypes regardless of immune deficiencies

L. Manuto, M. Grazioli, A. Spitaleri, P. Fontana, L. Bianco, L. Bertolotti, M. Bado, G. Mazzotti, F. Bianca, F. Onelia, G. Lorenzin, F. Simeoni, D. Lazarevic, E. Franchin, C. Del Vecchio, , S. Toppo

The paper analyzes SARS-CoV-2 genomic data from a quarantined Italian town, showing rapid intra-host emergence of novel viral haplotypes within two weeks, regardless of immune status or symptoms.

bioRxiv · Dec 22, 2021 · PreprintEvolutionary Biology

Characterization of genomic variants associated with resistance to bedaquiline and delamanid in naïve Mycobacterium tuberculosis clinical strains

S. Battaglia, A. Spitaleri, A. Cabibbe, C. Meehan, C. Utpatel, N. Ismail, S. Tahseen, A. Skrahina, N. Alikhanova, K. S. Mostofa, A. Barbova, S. Niemann, R. Groenheit, A. Dean, M. Zignol, , D. Cirillo

This study identifies genetic mutations associated with resistance to bedaquiline and delamanid in Mycobacterium tuberculosis strains using whole genome sequencing and in silico analysis.

bioRxiv · May 27, 2020Microbiology