Author

D. H. Buckley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 9

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Assay:metagenomics· 6 Organism:bacteria (other)· 4 Research Focus:ecology & biodiversity· 4 Research Focus:host-pathogen & immune response· 3 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

R. C. Wilhelm· 4 shared S. E. Barnett· 4 shared N. D. Youngblut· 3 shared C. N. Koechli· 2 shared B. Foster· 1 shared B. P. Bowen· 1 shared C. M. DeRito· 1 shared E. A. Eloe-Fadrosh· 1 shared

Activity by Year

2020-2022 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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4 shared papersMicrobiology

R. C. Wilhelm

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Author profile →

9 papers

Recent·Most cited

Genomic features predict bacterial life history strategies in soil, as identified by metagenomic stable isotope probing

S. E. Barnett, R. Egan, B. Foster, E. A. Eloe-Fadrosh, D. H. Buckley

The paper links genomic features of soil bacteria to their carbon acquisition and growth dynamics using metagenomic stable isotope probing, identifying genomic tradeoffs that align with life history theory predictions.

bioRxiv · Sep 9, 2022Microbiology

Tracing carbon metabolism with stable isotope metabolomics reveals the legacy of diverse carbon sources in soil

R. C. Wilhelm, S. E. Barnett, T. Swenson, N. D. Youngblut, C. N. Koechli, B. P. Bowen, T. Northen, D. H. Buckley

This study uses stable isotope metabolomics to track 13C from diverse carbon sources in soil over time, showing that carbon source type influences metabolite labeling and microbial activity patterns.

bioRxiv · Apr 5, 2022Microbiology

The RNA Virome of Echinoderms

E. W. Jackson, R. C. Wilhelm, D. H. Buckley, I. Hewson

This study characterizes the RNA virome of 38 echinoderm species, identifying 347 viral genome fragments across nine viral orders and finding no significant difference in viral reads between life stages.

bioRxiv · Mar 1, 2022Microbiology

Bacterial community dynamics explain carbon mineralization and assimilation in soils of different land-use history

S. E. Barnett, N. D. Youngblut, D. H. Buckley

The paper links bacterial community dynamics to carbon mineralization and assimilation in soils with different land-use histories using DNA-stable isotope probing.

bioRxiv · Feb 16, 2022Microbiology

Ecological insights into soil health according to the life-history traits and environment-wide associations of bacteria in agricultural soils

R. C. Wilhelm, J. P. Amsili, K. S. Kurtz, H. M. van Es, D. H. Buckley

The paper identifies bacterial indicators of soil health using life-history traits and environment-wide associations in agricultural soils, revealing trade-offs in genome size and their impact on soil health scores.

bioRxiv · Feb 3, 2022 · PreprintMicrobiology

Multi-substrate DNA stable isotope probing reveals guild structure in bacterially mediated soil carbon cycling

S. E. Barnett, N. D. Youngblut, C. N. Koechli, D. H. Buckley

The paper uses multi-substrate DNA stable isotope probing to identify bacterial guilds in soil carbon cycling, showing that C source bioavailability and guild structure influence C mineralization and biogeography.

bioRxiv · Mar 19, 2021 · PreprintMicrobiology

A non-adaptive demographic mechanism for genome expansion in Streptomyces

M. J. Choudoir, M. J. Järvenpää, P. Marttinen, D. H. Buckley

This study identifies a non-adaptive demographic mechanism, genome surfing, as a driver of genome expansion in Streptomyces sister-taxa due to geographic range expansion and relaxed selection.

bioRxiv · Jan 9, 2021 · PreprintMicrobiology

Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil

R. C. Wilhelm, C. M. DeRito, J. P. Shapleigh, E. L. Madsen, D. H. Buckley

The paper shows that phenolic acid-degrading bacteria, specifically Paraburkholderia, enhance SOC mineralization when primed with PHB, and their abundance correlates with SOC loss in forest soils.

bioRxiv · Sep 28, 2020Microbiology

The biogeography of Streptomyces in New Zealand enabled by high-throughput sequencing of genus-specific rpoB amplicons

S. A. Higgins, K. Panke-Buisse, D. H. Buckley

This study examines Streptomyces biogeography in New Zealand soils using rpoB amplicon sequencing, finding that soil pH and plant community richness influence community structure.

bioRxiv · Sep 22, 2020Microbiology