Author

Daniel Herschlag

Primary ORCID profile (0000-0002-4685-1973 · 8 papers)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Daniel HerschlagiD8 papers · Stanford University

Biology Disciplines

Click to filter author papers

Biochemistry· 1 Bioengineering· 1 Biophysics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Assay:structural biology· 2 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Assay:proteomics· 1

Frequent Co-Authors

Joseph D. Yesselman· 2 shared Namita Bisaria· 2 shared Rhiju DasiD· 2 shared Alexandra N. Ooms· 1 shared Daniel Eiler· 1 shared David A. Costantino· 1 shared Erik D. Carlson· 1 shared Inga Jarmoskaite· 1 shared

Activity by Year

2016-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBiophysics

Joseph D. Yesselman

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

RNA tertiary structure energetics predicted by an ensemble model of the RNA double helix

Joseph D. Yesselman, Sarah K. Denny, Namita Bisaria, Daniel Herschlag, William J. Greenleaf, Rhiju Das

The paper predicts RNA tertiary structure energetics using an updated helix ensemble model, showing accurate thermodynamic predictions for tertiary assemblies.

bioRxiv · Jun 6, 2018 · PreprintBiophysics

Computational Design of Asymmetric Three-dimensional RNA Structures and Machines.

Joseph D. Yesselman, Daniel Eiler, Erik D. Carlson, Alexandra N. Ooms, Wipapat Kladwang, Xuesong Shi, David A. Costantino, Daniel Herschlag, Michael C. Jewett, Jeffrey S. Kieft, Rhiju Das

The paper introduces RNAMake, a tool for designing asymmetric RNA structures, validated through experimental methods and demonstrating successful creation of complex 3D RNA folds and synthetic ribosomes.

bioRxiv · Nov 21, 2017 · PreprintBioengineering

Specificity Principles in RNA-Guided Targeting

Namita Bisaria, Inga Jarmoskaite, Daniel Herschlag

This study explains off-target activity in RNA-guided nucleases through kinetic models, offering a framework for improving their specificity.

bioRxiv · May 28, 2016Biochemistry