Author

Danni Hong

Xiamen University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Jialiang HuangiD· 2 shared Bin E. Li· 1 shared Davide SeruggiaiD· 1 shared Falong LuiD· 1 shared Guo‐Cheng YuaniD· 1 shared Hongli Lin· 1 shared Huafeng XieiD· 1 shared Jian XuiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Jialiang HuangORCID

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2 papers

Recent·Most cited

Complexity of enhancer networks predicts cell identity and disease genes revealed by single-cell multi-omics analysis

Danni Hong, Hongli Lin, Lifang Liu, Muya Shu, Jianwu Dai, Falong Lu, Mengsha Tong, Jialiang Huang

The paper introduces eNet, a method to build enhancer networks from single-cell data, showing complex networks regulate cell identity and disease genes better than existing models.

Briefings in Bioinformatics · Oct 25, 2022Peer-reviewedBioinformatics

Enhancer-dependence of gene expression increases with developmental age

Wenqing Cai, Jialiang Huang, Qian Zhu, Bin E. Li, Davide Seruggia, Pingzhu Zhou, Minh Nguyen, Yuko Fujiwara, Huafeng Xie, Zhenggang Yang, Danni Hong, Pengfei Ren, Jian Xu, William T. Pu, Guo‐Cheng Yuan, Stuart H. Orkin

The paper shows that enhancer-dependence of gene expression increases with developmental age in mouse and human cells.

bioRxiv · Jun 21, 2019 · PreprintMolecular Biology