Author

David Bray

Boston University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Research Focus:differential expression· 2 Research Focus:cell type annotation· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Jessica L. KeenaniD· 3 shared Trevor SiggersiD· 3 shared Ashley R. PenvoseiD· 2 shared Heather Hook· 2 shared Nima Mohaghegh· 2 shared Rose W. Zhao· 2 shared Kellen K AndrilenasiD· 1 shared Melissa M. IngeiD· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersMolecular Biology

Jessica L. KeenanORCID

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3 papers

Recent·Most cited

Rapid profiling of transcription factor-cofactor interaction networks reveals principles of epigenetic regulation

Melissa M. Inge, Rebekah Miller, Heather Hook, David Bray, Jessica L. Keenan, Rose W. Zhao, Thomas D. Gilmore, Trevor Siggers

The paper introduces CoRec, a method to profile TF-COF complexes, revealing KAT-TF interactions and their role in H3K27ac regulation.

Nucleic Acids Research · Aug 14, 2024Peer-reviewedMolecular Biology

Customizable high-throughput platform for profiling cofactor recruitment to DNA to characterize cis-regulatory elements and screen non-coding single-nucleotide polymorphisms

David Bray, Heather Hook, Rose W. Zhao, Jessica L. Keenan, Ashley R. Penvose, Yemi Osayame, Nima Mohaghegh, Trevor Siggers

The paper introduces CASCADE, a high-throughput platform to profile cofactor recruitment to DNA variants, identifying key regulators and ETS sites in macrophages.

bioRxiv · Apr 21, 2020 · PreprintGenomics

Biophysical Principles of Lineage Factor PU.1 Binding Revealed by NextPBMs

Nima Mohaghegh, David Bray, Jessica L. Keenan, Ashley R. Penvose, Kellen K Andrilenas, Vijendra Ramlall, Trevor Siggers

The paper introduces nextPBMs to study TF binding with PTMs and cofactors, revealing PU.1's binding modes and cofactor influences in monocytes.

Nucleic Acids Research · Jan 16, 2019Peer-reviewedMolecular Biology