Author

David Carrillo

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Daniel H. Kim· 3 shared Roman E. ReggiardoiD· 3 shared Mehmet Ozgün OzeniD· 2 shared Sreelakshmi Velandi Maroli· 2 shared Utkan DemirciiD· 2 shared Eejung KimiD· 1 shared Eric Andrew CollissoniD· 1 shared Erin LaMontagneiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Daniel H. Kim

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Transposable element RNA dysregulation in mutant KRAS(G12C) 3D lung cancer spheroids

David Carrillo, Roman E. Reggiardo, John Lim, Gary L. Mantalas, Vikas Peddu, Daniel H. Kim

This study investigates how KRAS(G12C) mutations affect transposable element RNA expression in 3D lung cancer spheroids, finding mutation-specific TE RNA dysregulation and activation of Alu-derived RNAs with innate immunity genes.

bioRxiv · Feb 27, 2023 · PreprintGenomics

Extracellular RNA signatures of mutant KRAS(G12C) lung adenocarcinoma cells

Reem Khojah, Roman E. Reggiardo, Mehmet Ozgün Ozen, Sreelakshmi Velandi Maroli, David Carrillo, Utkan Demirci, Daniel H. Kim

This study identifies specific extracellular RNA signatures secreted by mutant KRAS(G12C) lung adenocarcinoma cells that correlate with patient survival.

bioRxiv · Feb 23, 2022 · PreprintGenomics

Epigenomic reprogramming of repetitive noncoding RNAs and IFN-stimulated genes by mutant KRAS

Roman E. Reggiardo, Sreelakshmi Velandi Maroli, Haley Halasz, Mehmet Ozgün Ozen, David Carrillo, Erin LaMontagne, Lila Whitehead, Eejung Kim, Shivani Malik, Jason D. Fernandes, Georgi K. Marinov, Eric Andrew Collisson, Utkan Demirci, Daniel H. Kim

This study identifies how mutant KRAS reprograms the noncoding transcriptome, upregulating repetitive noncoding RNAs and inducing IFN-stimulated genes through epigenetic and RNA-based mechanisms.

bioRxiv · Nov 4, 2020 · PreprintGenomics