PatternExtract: A facile, scalable pipeline for point pattern generation from spatial imaging data
Shruti Sridhar, Gayatri Kumar, Victoire Ringler, Kanav Gupta, Siddham Jasoria, Ziwei Meng, Patrick William Jaynes, Chartsiam Tipgomut, Vaibhav Rajan, David Scott, Claudio Tripodo, Kasthuri Kannan, Anand Devaprasath D. Jeyasekharan
PatternExtract generates spatial point patterns from pathology images and cell coordinates using a two-kernel segmentation method and automated classification, validated on lymphoma data.
Computational and Structural Biotechnology Journal · Jan 1, 2026Peer-reviewedBioinformatics