BioinformaticsComputational and Structural Biotechnology JournalPeer-reviewed
PatternExtract: A facile, scalable pipeline for point pattern generation from spatial imaging data
Shruti Sridhar, Gayatri Kumar, Victoire Ringler…·Anand Devaprasath D. Jeyasekharan
PatternExtract generates spatial point patterns from pathology images and cell coordinates using a two-kernel segmentation method and automated classification, validated on lymphoma data.