Author

Devika Udupa

University of Nebraska Medical Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:fine-mapping· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Achyuth KalluchiiD· 2 shared Hannah L. HarrisiD· 2 shared M. Jordan RowleyiD· 2 shared A. Gesine CaueriD· 1 shared Ailun WangiD· 1 shared Akshay KrishnaiD· 1 shared Arina D. OmeriD· 1 shared Aviva Presser AideniD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersGenomics

Achyuth KalluchiORCID

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2 papers

Recent·Most cited

Kilobase-scale compartments enabled by CRUSH reveal regulatory programs across cell types, single-cells, and ancient mammoths

Achyuth Kalluchi, Ben Nolan, Timothy E. Reznicek, Hannah L. Harris, Devika Udupa, Christopher T. Cummings, M. Jordan Rowley

The paper introduces CRUSH, a method to refine chromatin compartments to 1 kb resolution, revealing regulatory programs across cell types and a woolly mammoth's cold-adapted regulome.

bioRxiv · Apr 28, 2026 · PreprintGenomics

Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not

Hannah L. Harris, Huiya Gu, Moshe Olshansky, Ailun Wang, Irene Farabella, Yossi Eliaz, Achyuth Kalluchi, Akshay Krishna, Mozes Jacobs, A. Gesine Cauer, Melanie Pham, Suhas S.P. Rao, Olga Dudchenko, Arina D. Omer, Kiana Mohajeri, , M. Jordan Rowley

The paper uses ultra-deep Hi-C and a new computational method to fine-map nuclear compartments, revealing that active promoters and enhancers localize in the A compartment even when adjacent sequences are inactive.

Nature Communications · Jun 6, 2023Peer-reviewedGenomics