Author

E. A. Strain

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

A. Ottesen· 4 shared B. J. Kocurek· 3 shared E. Reed· 3 shared M. K. Mammel· 3 shared P. F. McDermott· 3 shared P. Ramachandran· 3 shared C. J. Grim· 2 shared A. Franklin· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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4 shared papersMicrobiology

A. Ottesen

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Author profile →

4 papers

Recent·Most cited

Paired metagenomic and chemical evaluation of an aflatoxin contaminated dog kibble

A. Ottesen, B. J. Kocurek, E. Reed, S. Commichaux, M. K. Mammel, P. Ramachandran, P. F. McDermott, B. M. Flannery, E. A. Strain

The paper evaluates aflatoxin-contaminated dog kibble using paired metagenomic and chemical data to correlate fungal DNA abundance with toxin levels.

bioRxiv · Feb 14, 2024Microbiology

Fecal microbiomes of laboratory beagles receiving antiparasitic formulations in an experimental setting

A. Ottesen, B. J. Kocurek, C. Deaver, O. Chiesa, R. Cohen, M. K. Mammel, E. Reed, P. F. McDermott, E. A. Strain, M. Myers

The paper describes the fecal microbiome of laboratory beagles before and after antiparasitic drug administration to assess in vivo versus in vitro bioequivalence.

bioRxiv · Aug 8, 2023Microbiology

Metagenomic survey of antimicrobial resistance (AMR) in Maryland surface waters differentiated by high and low human impact

B. Kocurek, G. Martin, S. Behling, P. Ramachandran, E. Reed, C. J. Grim, M. Mammel, J. Zheng, A. Franklin, J. Garland, D. Tadesse, M. Sharma, G. Tyson, C. Kabera, H. Tate, , A. Ottesen

The paper surveys antimicrobial resistance in Maryland surface waters, finding higher prevalence of beta-lactamase genes in high human impact areas.

bioRxiv · Jun 20, 2023Microbiology

Application of Quasimetagenomics Methods to Define Microbial Diversity and Subtype Listeria monocytogenes in Dairy and Seafood Production Facilities

B. J. Kocurek, P. Ramachandran, C. J. Grim, P. Morin, L. Howard, A. Ottesen, R. E. Timme, S. R. Leonard, H. Rand, E. A. Strain, D. A. Tadesse, J. Pettengill, D. W. Lacher, M. K. Mammel, K. G. Jarvis

This study uses 16S rRNA and shotgun quasimetagenomic sequencing to analyze microbial diversity and subtype Listeria monocytogenes in food production facilities, establishing detection thresholds and providing insights for pathogen control.

bioRxiv · Nov 7, 2022 · PreprintMicrobiology

E. A. Strain · henhao