Author

E. D. Sonnenburg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

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Assay:metagenomics· 5 Approach:experimental assay· 4 Organism:human· 4 Research Focus:host-pathogen & immune response· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

J. L. Sonnenburg· 5 shared M. R. Olm· 3 shared A. R. Jha· 2 shared B. D. Merrill· 2 shared D. Dahan· 2 shared G. K. Fragiadakis· 2 shared M. M. Carter· 2 shared N. Neff· 2 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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5 shared papersMicrobiology

J. L. Sonnenburg

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Author profile →

5 papers

Recent·Most cited

Hadza Prevotella Require Diet-derived Microbiota Accessible Carbohydrates to Persist in Mice.

R. H. Gellman, M. R. Olm, N. Terrapon, F. Enam, S. K. Higginbottom, J. L. Sonnenburg, E. D. Sonnenburg

The paper shows that Prevotella copri requires plant-derived microbiota-accessible carbohydrates for persistence in mice, unlike Bacteroides thetaiotaomicron.

bioRxiv · Mar 8, 2023Microbiology

Robust Variation in Infant Gut Microbiome Assembly Across a Spectrum of Lifestyles

M. R. Olm, D. Dahan, M. M. Carter, B. D. Merrill, B. Yu, S. Jain, X. D. Meng, S. Tripathi, H. Wastyk, N. Neff, S. Holmes, E. D. Sonnenburg, A. R. Jha, J. L. Sonnenburg

This study compares infant gut microbiome assembly in Hadza hunter-gatherers and industrialized infants, finding distinct microbial trajectories and functional differences.

bioRxiv · Mar 30, 2022Microbiology

Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Microbes

B. D. Merrill, M. M. Carter, M. R. Olm, D. Dahan, S. Tripathi, S. P. Spencer, F. B. Yu, S. Jain, N. Neff, A. R. Jha, E. D. Sonnenburg, J. L. Sonnenburg

The paper uses ultra-deep metagenomic sequencing to analyze the gut microbiome of Hadza hunter-gatherers, revealing many microbes absent from existing datasets and highlighting differences in microbial dynamics compared to industrialized populations.

bioRxiv · Mar 30, 2022 · PreprintMicrobiology

Long-term dietary intervention reveals resilience of the gut microbiota despite changes in diet and weight

G. K. Fragiadakis, H. C. Wastyk, J. L. Robinson, E. D. Sonnenburg, J. L. Sonnenburg, C. D. Gardner

This study tracks gut microbiota changes over 12 months in response to low-carbohydrate or low-fat diets, finding initial shifts followed by resilience to long-term perturbation.

bioRxiv · Aug 8, 2019Microbiology

Links between environment, diet, and the hunter-gatherer microbiome

G. K. Fragiadakis, S. A. Smits, E. D. Sonnenburg, W. Van Treuren, G. Reid, R. Knight, A. Manjurano, J. Changalucha, M. G. Dominguez-Bello, J. Leach, J. L. Sonnenburg

The paper examines the microbiome of Hadza hunter-gatherers, finding seasonal changes and unique bacterial families compared to industrialized populations.

bioRxiv · May 15, 2018Microbiology