Author

E.-J. Choi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Cancer Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Approach:biophysical modeling· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

W. Wu· 2 shared X. Bao· 2 shared A. Adam· 1 shared A. Voshall· 1 shared B. Lee· 1 shared B. Wang· 1 shared D.-W. Kim· 1 shared E. A. Lee· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersMicrobiology

W. Wu

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Pan-cancer analysis reveals multifaceted roles of retrotransposon-fusion RNAs

B. Lee, J. Park, A. Voshall, E. Maury, Y. Kang, Y. J. Kim, J.-Y. Lee, H.-R. Shim, H.-J. Kim, J.-W. Lee, M.-H. Jung, S.-C. Kim, H. B. K. Chu, D.-W. Kim, M. Kim, , E. A. Lee

The paper identifies cancer-specific transposon-fusion RNAs across 34 cancer types and finds they are associated with tumor suppressors and oncogenes, and can activate T-cells.

bioRxiv · Oct 16, 2023 · PreprintCancer Biology

Changes of small non-coding RNAs by severe acute respiratory syndrome coronavirus 2 infection

W. Wu, E.-J. Choi, B. Wang, K. Zhang, A. Adam, G. Huang, L. Tunkle, P. Huang, R. Goru, I. Imirowicz, L. Henry, I. Lee, J. Dong, T. Wang, X. Bao

This study identifies changes in small non-coding RNAs (sncRNAs) in SARS-CoV-2 infection, showing that tRFs and a viral-derived sncRNA (sv-CoV2-346) are significantly altered.

bioRxiv · Dec 16, 2021Microbiology

MLC Seq: De novo sequencing of full-length tRNA isoforms by mass ladder complementation

X. Yuan, Y. Su, X. Zhang, S. J. Turkel, S. Shi, X. Wang, E.-J. Choi, W. Wu, H. Liu, R. Viner, J. J. Russo, W. Li, X. Bao, Q. Chen, S. Zhang

This paper introduces MLC-Seq, a method to sequence full-length tRNA isoforms and quantify RNA modifications, demonstrating its application on yeast and mouse tRNAs.

bioRxiv · May 22, 2021Biochemistry