High-throughput, organ-scale 3D tubule tracking using TubuleMAP
Chetan Poudel, David Brenes, Wenhui Xie, Yvonne Guan, Pedro Vasquez, Naren Mahadevan, Eesha Konatham, Nina Fan, Ziyu Guo, Nicolas J Porter, Madeline K. Wong, Michelle M. Martinez Irizarry, Ruben M. Sandoval, Kenneth W. Dunn, Pierre C. Dagher, , Joshua C. Vaughan
The paper introduces TubuleMAP, a semi-automated 3D tubule tracking pipeline for analyzing tubular networks, achieving high throughput and accuracy in reconstructing kidney and testis tubules.
bioRxiv · Apr 27, 2026 · PreprintBioengineering