Author

Pedro Vasquez

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Cell Biology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:imaging· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Chetan PoudeliD· 3 shared Joshua C. VaughaniD· 3 shared Diana G. EngiD· 2 shared Madeline K. Wong· 2 shared Stuart J. ShanklandiD· 2 shared Ziyu GuoiD· 2 shared Adilijiang AliiD· 1 shared Benjamin C. Mustonen· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersCell Biology

Chetan PoudelORCID

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Author profile →

3 papers

Recent·Most cited

A Human Precision Cut Kidney Slice Platform for Studying Glomerular Biology and Therapeutic Responses

Shreeram Akilesh, Xianwu Li, Bre Mills, Chetan Poudel, Pedro Vasquez, Emily Beirne, Joshua C. Vaughan, Kelly D. Smith

This study uses human precision cut kidney slices to analyze gene expression responses to culture conditions and IFNγ stimulation, showing reproducible APOL1 expression changes.

bioRxiv · Oct 19, 2026 · PreprintCell Biology

High-throughput, organ-scale 3D tubule tracking using TubuleMAP

Chetan Poudel, David Brenes, Wenhui Xie, Yvonne Guan, Pedro Vasquez, Naren Mahadevan, Eesha Konatham, Nina Fan, Ziyu Guo, Nicolas J Porter, Madeline K. Wong, Michelle M. Martinez Irizarry, Ruben M. Sandoval, Kenneth W. Dunn, Pierre C. Dagher, , Joshua C. Vaughan

The paper introduces TubuleMAP, a semi-automated 3D tubule tracking pipeline for analyzing tubular networks, achieving high throughput and accuracy in reconstructing kidney and testis tubules.

bioRxiv · Apr 27, 2026 · PreprintBioengineering

Nanoscale Optical Imaging, Reconstruction, and Spatial Analysis of Whole Mouse Glomeruli

Adilijiang Ali, Zixuan Liu, Kenan Ye, Yun Guan, Siying Chen, Tingxuan Liu, Ziyu Guo, Madeline K. Wong, Pedro Vasquez, Chetan Poudel, Benjamin C. Mustonen, Diana G. Eng, Jeffrey W. Pippin, Stuart J. Shankland, Sheng Wang, Joshua C. Vaughan

The paper develops a pipeline for high-resolution imaging and analysis of whole mouse glomeruli, revealing novel aging and disease-related phenotypes.

Kidney International · Aug 22, 2025Peer-reviewedPhysiology