Author

Ekaterina Ivleva

University of Pittsburgh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:machine learning (classical)· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:trajectory inference· 2

Frequent Co-Authors

Emil Kriukov· 2 shared Petr Y. BaranoviD· 2 shared A. SarachakoviD· 1 shared Aleksandr Zaitsev· 1 shared Alexander BagaeviD· 1 shared Alexander Kuznetsov· 1 shared Anastasia Zolotar· 1 shared Anastasia ZotovaiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersNeuroscience

Emil Kriukov

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

A lifespan single-cell atlas of the human developing hippocampus benchmarks familial Alzheimer's disease brain organoids.

Ekaterina Ivleva, Emil Kriukov, Joseph F. Arboleda‐Velásquez, Petr Y. Baranov

The paper constructs a lifespan single-cell atlas of the human developing hippocampus and benchmarks iPSC-derived brain organoids with a PSEN1 mutation linked to familial Alzheimer's disease.

bioRxiv · Sep 20, 2026 · PreprintNeuroscience

Quantitative assessment of cell fate commitment in single-cell transcriptomics using scCS

Emil Kriukov, Ekaterina Ivleva, Petr Y. Baranov

The paper introduces scCS, a framework for quantifying cell fate commitment parameters in single-cell transcriptomics, using methods like DFFP and providing diagnostics and visualizations.

bioRxiv · Jul 30, 2026 · PreprintBioinformatics

AI-based separation of malignant cell- and microenvironment-specific gene expression from bulk RNA sequencing enhances biomarker interpretation

Anastasia Zolotar, Daniil S. Wiebe, Arman Petrosyants, Boris Shpak, Natalia Khotkina, Valentina Beliaeva, Ekaterina Ivleva, Linda Balabanian, Maksim Chelushkin, Daniiar Dyikanov, Maria Savchenko, Sheila T. Yong, Danil Litvinov, Anastasia Zotova, Alexander Kuznetsov, , Alexander Bagaev

Helenus separates malignant and microenvironment gene expression from bulk RNA-seq to improve biomarker interpretation in cancer.

bioRxiv · Apr 30, 2026 · PreprintCancer Biology