Author

A. Sarachakov

ORCID 0009-0001-0838-9626Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Cancer Biology· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Alexander BagaeviD· 3 shared Daniil S. WiebeiD· 2 shared Ekaterina PostovalovaiD· 2 shared Krystle J. NomieiD· 2 shared Abir Kumar PandaiD· 1 shared Aida Akaeva· 1 shared Aleksandr Zaitsev· 1 shared Alex Rossi· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersCancer Biology

Alexander BagaevORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintApr 30, 2026

AI-based separation of malignant cell- and microenvironment-specific gene expression from bulk RNA sequencing enhances biomarker interpretation

Anastasia Zolotar, Daniil S. Wiebe, Arman Petrosyants…·Alexander Bagaev

Helenus separates malignant and microenvironment gene expression from bulk RNA-seq to improve biomarker interpretation in cancer.

DOI 10.64898/2026.04.28.721082

humanbulk RNA-seq

𝕏 PostBluesky

Cancer BiologybioRxivPreprintOct 26, 2025

A simple circuit to sustain intact tumor microenvironments for complex drug interrogations

Amber Leila Sarvestani, Samantha M. Ruff, Kirsten Remmert…·Jonathan Matthew Hernandez

The paper develops a perfusion circuit system to preserve tumor microenvironments in 3D patient-derived tumor models for up to 48 hours, enabling complex drug interrogations.

DOI 10.1101/2025.10.26.684624

humanbulk RNA-seq

𝕏 PostBluesky

Systems BiologybioRxivPreprintApr 28, 2023

Single Cell Resolution Spatial Mapping of Human Hematopoiesis Reveals Aging-Associated Topographic Remodeling

Aleksandr Sarachakov, Arina Varlamova, Viktor Svekolkin…·Sanjay S. Patel

This study maps human hematopoiesis at single-cell resolution, revealing aging-associated topographic remodeling in bone marrow.

DOI 10.1101/2023.04.28.538715

humanspatial transcriptomics

𝕏 PostBluesky