F. Lassalle

Genomic epidemiology of the cholera outbreak in Yemen reveals the spread of a multi-drug resistance plasmid between diverse lineages of Vibrio cholerae

The paper analyzes genomic data from a Yemen cholera outbreak to show the spread of a multi-drug resistance plasmid among Vibrio cholerae strains.

Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation

The paper proposes a new framework for genus delimitation in Rhizobiaceae based on core-genome phylogeny and cpAAI thresholds, leading to reclassifications of several species.

Phylogenomic analysis reveals the basis of adaptation of Pseudorhizobium species to extreme environments

This paper reclassifies Pseudorhizobium species based on genomic analysis and identifies key functions for adaptation to extreme environments.

Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales

The paper investigates the diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales using comparative genomics across 27,334 genomes, revealing dynamics driven by horizontal gene transfer and selective preservation.

Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses.

This study uses whole genome sequencing of HSV-1 from CSF and skin lesions to identify selective constraints and recombination patterns in neurotropic viruses.

Ancestral genome estimation reveals the history of ecological diversification in Agrobacterium.

The paper estimates the ancestral genome history of Agrobacterium biovar 1 to reveal how horizontal gene transfer contributed to ecological diversification.