Author

Frederick J. Tan

Carnegie Institution for Science

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:differential expression· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Jeffrey T. LeekiD· 2 shared Katherine E.L. CoxiD· 2 shared Michael C. SchatziD· 2 shared Stephen MosheriD· 2 shared Alessandro CulottiiD· 1 shared Alexander Baumann· 1 shared Alexander OstrovskyiD· 1 shared Alexandru MahmoudiD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersScientific Communication & Education

Jeffrey T. LeekORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Insights into the Datasets, Tools, and Training Needs of the AnVIL Community: 2024

Kathryn J. Isaac, Katherine E.L. Cox, Kai Yin Ho, Elizabeth Humphries, Natalie Kucher, Jeffrey T. Leek, Stephen Mosher, Michael C. Schatz, Frederick J. Tan, Ava M. Hoffman

This study surveys the AnVIL community to understand user needs, training preferences, and platform adoption opportunities.

F1000Research · Dec 22, 2025Peer-reviewedScientific Communication & Education

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

Michael C. Schatz, Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell‐Luria, , Jason Walker

The paper describes AnVIL, a cloud-based platform that enables genomic data analysis without data transfer, improving security, scalability, and collaboration.

Cell Genomics · Jan 1, 2022Peer-reviewedBioinformatics

mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces potentially functional transcripts

Jennifer Lynn Anderson, Timothy S. Mulligan, Meng‐Chieh Shen, Hui Wang, Catherine M. Scahill, Frederick J. Tan, Shaojun Du, Elisabeth M. Busch‐Nentwich, Steven Arthur Farber

The paper analyzes mRNA processing in zebrafish mutant lines to explain why few phenotypes are observed despite predicted gene disruptions.

PLoS Genetics · Nov 21, 2017Peer-reviewedMolecular Biology