Author

Fumi Wagai

Kyoto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CRISPR screen· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Mototsugu EirakuiD· 2 shared Atsushi MochizukiiD· 1 shared Hisanori KiryuiD· 1 shared Kazuya Z. SuzukiiD· 1 shared Kosuke YusaiD· 1 shared Masato IshikawaiD· 1 shared Nobuko Taniyama· 1 shared Seiichi Sugino· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersDevelopmental Biology

Mototsugu EirakuORCID

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2 papers

Recent·Most cited

Reconstruction of functional olfactory sensory tissue from embryonic nasal stem cells

Kazuya Z. Suzuki, Fumi Wagai, Mototsugu Eiraku

This study creates OE organoids from mouse embryonic stem cells that mimic the structure and molecular features of olfactory epithelium, including single OR expression and axon guidance gene patterns.

bioRxiv · Sep 13, 2024 · PreprintDevelopmental Biology

Inference of gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations

Masato Ishikawa, Seiichi Sugino, Yoshie Masuda, Yusuke Tarumoto, Yusuke Seto, Nobuko Taniyama, Fumi Wagai, Yuhei Yamauchi, Yasuhiro Kojima, Hisanori Kiryu, Kosuke Yusa, Mototsugu Eiraku, Atsushi Mochizuki

This paper introduces RENGE, a method for inferring gene regulatory networks from time-series scCRISPR data, which outperforms existing methods and produces GRNs consistent with known databases.

bioRxiv · Aug 23, 2023 · PreprintBioinformatics