Author

Nobuko Taniyama

Kyoto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Mototsugu EirakuiD· 2 shared Alexis VandenboniD· 1 shared Atsushi MochizukiiD· 1 shared Fumi Wagai· 1 shared Hisanori KiryuiD· 1 shared Kosuke YusaiD· 1 shared Masato IshikawaiD· 1 shared Masatoshi OhgushiiD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Mototsugu EirakuORCID

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2 papers

Recent·Most cited

Inference of gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations

Masato Ishikawa, Seiichi Sugino, Yoshie Masuda, Yusuke Tarumoto, Yusuke Seto, Nobuko Taniyama, Fumi Wagai, Yuhei Yamauchi, Yasuhiro Kojima, Hisanori Kiryu, Kosuke Yusa, Mototsugu Eiraku, Atsushi Mochizuki

This paper introduces RENGE, a method for inferring gene regulatory networks from time-series scCRISPR data, which outperforms existing methods and produces GRNs consistent with known databases.

bioRxiv · Aug 23, 2023 · PreprintBioinformatics

Cell-autonomous differentiation of human primed embryonic stem cells into trophoblastic syncytia through the nascent amnion-like cell state

Masatoshi Ohgushi, Nobuko Taniyama, Alexis Vandenbon, Mototsugu Eiraku

This study shows that blocking ACTIVIN/NODAL and FGF signals in human pESCs leads to GATA3-expressing syncytia resembling trophoblasts, revealing a cell-autonomous differentiation pathway.

Cell Reports · Jun 1, 2022Peer-reviewedDevelopmental Biology