Author

Yusuke Seto

Kyoto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Atsushi MochizukiiD· 1 shared Fumi Wagai· 1 shared Hisanori KiryuiD· 1 shared Kentaro IchijoiD· 1 shared Kosuke YusaiD· 1 shared Kozo KaibuchiiD· 1 shared Mariko YamashitaiD· 1 shared Masaki SoneiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Atsushi MochizukiORCID

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2 papers

Recent·Most cited

Inference of gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations

Masato Ishikawa, Seiichi Sugino, Yoshie Masuda, Yusuke Tarumoto, Yusuke Seto, Nobuko Taniyama, Fumi Wagai, Yuhei Yamauchi, Yasuhiro Kojima, Hisanori Kiryu, Kosuke Yusa, Mototsugu Eiraku, Atsushi Mochizuki

This paper introduces RENGE, a method for inferring gene regulatory networks from time-series scCRISPR data, which outperforms existing methods and produces GRNs consistent with known databases.

bioRxiv · Aug 23, 2023 · PreprintBioinformatics

CyclinD1 controls development of cerebellar granule cell progenitors through phosphorylation and stabilization of ATOH1

Satoshi Miyashita, Tomoo Owa, Yusuke Seto, Mariko Yamashita, Shogo Aida, Masaki Sone, Kentaro Ichijo, Tomoki Nishioka, Kozo Kaibuchi, Yoshiya Kawaguchi, Shinichiro Taya, Mikio Hoshino

This study identifies a signaling cascade involving WNT-PROX1-CCND1-ATOH1 that regulates cerebellar granule cell progenitor proliferation and immaturity.

The EMBO Journal · May 31, 2021Peer-reviewedDevelopmental Biology