Author

G. Fudenberg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:chromatin & epigenetic regulation· 2 Organism:human· 2 Approach:deep learning· 1 Assay:Hi-C· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

D. C. Rinker· 1 shared E. McArthur· 1 shared E. N. Gilbertson· 1 shared F. Yue· 1 shared J. A. Capra· 1 shared J. Nuebler· 1 shared J. Wang· 1 shared K. Keough· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperEvolutionary Biology

D. C. Rinker

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Reconstructing the 3D genome organization of Neanderthals reveals that chromatin folding shaped phenotypic and sequence divergence

E. McArthur, D. C. Rinker, Y. Cheng, Q. Wang, J. Wang, E. N. Gilbertson, G. Fudenberg, M. Pittman, K. Keough, F. Yue, K. S. Pollard, J. A. Capra

This study uses deep learning to infer 3D genome organization from ancient DNA, revealing how chromatin folding influenced phenotypic and sequence divergence between Neanderthals, Denisovans, and modern humans.

bioRxiv · Feb 7, 2022 · PreprintEvolutionary Biology

Chromatin Organization by an Interplay of Loop Extrusion and Compartmental Segregation

J. Nuebler, G. Fudenberg, M. Imakaev, N. Abdennur, L. Mirny

This study uses polymer simulations to show how loop extrusion and compartmental segregation interact to shape chromatin organization, revealing their distinct and interdependent roles in chromosome structure.

bioRxiv · Oct 3, 2017Biophysics