Author

H. Keren-Shaul

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

A. C. Greenwald· 2 shared I. Tirosh· 2 shared A. Minsky· 1 shared A. Plotnikov· 1 shared A. Regev· 1 shared A. Tsherniak· 1 shared A. Warren· 1 shared B. Kumar· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersCancer Biology

A. C. Greenwald

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Author profile →

3 papers

Recent·Most cited

Integrative spatial analysis reveals a multi-layered organization of glioblastoma

A. C. Greenwald, N. G. Darnell, R. Hoefflin, D. Simkin, L. N. Gonzalez-Castro, C. Mount, D. Hirsch, M. Nomura, T. Talpir, M. Kedmi, I. Goliand, G. Medici, B. Li, H. Keren-Shaul, M. Weller, , I. Tirosh

This study uses spatial transcriptomics and proteomics to reveal three modes of cellular organization in glioblastoma, with hypoxia driving a 5-layered global architecture.

bioRxiv · Jul 6, 2023Cancer Biology

Acanthamoeba polyphaga de novo transcriptome and its dynamics during Mimivirus infection

R. Nuri, E. Feldmesser, Y. Fridmann-Sirkis, H. Keren-Shaul, R. Nevo, A. Minsky, Z. Reich

This study generates a de novo transcriptome of Acanthamoeba polyphaga and analyzes host and virus transcriptome dynamics during Mimivirus infection, revealing cell cycle arrest and host gene modulation.

bioRxiv · Jul 20, 2022 · PreprintMicrobiology

Pan-cancer single cell RNA-seq uncovers recurring programs of cellular heterogeneity

G. S. Kinker, A. C. Greenwald, R. Tal, Z. Orlova, M. S. Cuoco, J. M. McFarland, A. Warren, C. Rodman, J. A. Roth, S. A. Bender, B. Kumar, J. W. Rocco, P. A. Fernandes, C. C. Mader, H. Keren-Shaul, , I. Tirosh

The paper uses single-cell RNA-seq to analyze cancer cell lines and identifies recurring expression programs of heterogeneity that mirror those in tumors, suggesting intrinsic plasticity contributes to intra-tumoral diversity.

bioRxiv · Oct 21, 2019 · PreprintCancer Biology