Author

Halie Rae Ropp

University of Freiburg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Manuel Brenes‐ÁlvareziD· 2 shared Wolfgang R. HessiD· 2 shared Agustı́n VioqueiD· 1 shared Alicia Marı́a Muro-PastoriD· 1 shared Clément M. PoteliD· 1 shared Dimitrios PapagiannidisiD· 1 shared Dominik RabschiD· 1 shared Dörte BecheriD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Manuel Brenes‐ÁlvarezORCID

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2 papers

Recent·Most cited

RAPDOR: Using Jensen-Shannon Distance for the computational analysis of complex proteomics datasets

Luisa Hemm, Dominik Rabsch, Halie Rae Ropp, Viktoria Reimann, Philip Gerth, Jürgen Bartel, Manuel Brenes‐Álvarez, Sandra Maaß, Dörte Becher, Wolfgang R. Hess, Rolf Backofen

RAPDOR uses Jensen-Shannon distance to analyze complex proteomics datasets, identifying RNA-binding proteins in cyanobacteria and showing its utility in stress-induced protein redistribution.

Nature Communications · Sep 26, 2025Peer-reviewedBioinformatics

RNA-binding proteins identified by R-DeeP/TripepSVM are involved in heterocyst differentiation

Manuel Brenes‐Álvarez, Halie Rae Ropp, Dimitrios Papagiannidis, Clément M. Potel, Frank Stein, Mikhail M. Savitski, Agustı́n Vioque, Alicia Marı́a Muro-Pastor, Wolfgang R. Hess

The paper identifies RNA-binding proteins involved in heterocyst differentiation in cyanobacteria using mass spectrometry and bioinformatics, revealing a new master regulator.

bioRxiv · Apr 3, 2024 · PreprintMolecular Biology